Defined in file : brainvisa/types/builtin.py
01. DICE calculation (Batch mode) : FFD vs median subsample of volume
[Atlas] Hierarchy Tools
[Binary Volume] Extract Bounding Box (BinaryBoundingBox)
[Binary Volume] Extract Bounding Box from Binary (BoundingBoxCalculation)
[Volume] Connected Component
[Volume] Segment brain from photo (mac)
Average Sulcus Morphological Curves
Binary image: bounding box calculation
Bounding box transformation application
Brainvisa Show Text
Calcul DICE's score on masks/labels volume
Check Constellation Files
Choose best recognition
Cluster detection
Color segmentation: class selection
Color segmentation: feature based classification
Color segmentation: feature based model learning
Color segmentation: model visualization
Compute pairwise distances for a given sulcus
Compute stats data component
Constellation Group QC table
Constellation Individual QC table
Create an inter subject measures file
Create Surface-Based Statistical Parametric Maps
Database QC table
Elastix transformation estimation
Extract list of values
Freesurfer / BrainVISA QC table
Freesurfer aparcstats2table
Freesurfer asegstats2table
Generate optimization cartography workflow
GenerateROIAnalysisFiles
Get Functional Signals in Gyrus
Grey level replacement
GreyLevelConversionToActivity
Histology : 3d reconstruction pipeline
Histology: 3D reconstruction pipeline
Import volBrain results into a brainvisa database
Labeled volume: calculate the bounding box for each label
Leave-one-out RSS
ml - Factorial design
ml - Fast model generation and testing
ml - Features extraction using feature description file
ml - K Nearest neighbors cross-validation
ml - Logistic regression cross-validation
ml - Logistic regression cross-validation + Classes selection
ml - Multiclass AdaBoost image level cross-validation
ml - Parallel features extraction using feature description file
ml - Parallel multiple images features extraction
ml - Segmentation pipeline
ml - Support Vector Machines cross-validation
ml - Weighted Random Forest
ml - Weighted Random Forest image level cross-validation
ml - Weighted Random Forest image-level cross-validation pipeline
ml - Weighted Random Forest pipeline
ml - Weighting Random Forest (+ cross-validation)
Morphologist CAPSUL iteration
Morphologist QC table
Pairwise Dice computation
Pairwise Distance computation Component
Parallel recognition
Permutatations synthesis
PETScanAtlasAnalysis
QC table of a DARTEL Template
QC table of a DISCO Study
QC table of DARTEL Templates
QC table of DISCO and DARTEL inputs
QC table of DISCO Studies
Recognition Error
Remove Individual Constellation Files
Single permutation
spm8 - VBM Segmentation - generic
StackingPhotographs
Sulci Curvature Stats
T-test
Transfer Sulci Labels
VolumeROIAnalysis
CSV file
Hierarchy
HTML
JSON file
Minf
PDF File
Python Script
Referential
Soma-Workflow workflow
Text Data Table
Text file
Transformation matrix
XLS file
XLSX file
XML
{center}/{subject}/volBrain/{acquisition}/native/<subject>_native_readme
{center}/{subject}/volBrain/{acquisition}/mni/<subject>_mni_readme
protocol , subject , sulcus_name , side , filename_variable , acquisition , covariate_table , center , analysis , template
protocol , subject , sulcus_name , side , acquisition , analysis , group_of_subjects , covariate_table , filename_variable , center , template , graph_version , sulci_recognition_session , manually_labelled , automatically_labelled , best
time_duration , acquisition_date , time_point , rescan , center , subject , acquisition , analysis , graph_version , sulci_recognition_session , manually_labelled , automatically_labelled , Study , sulcus_name , side , atlasname , factorial_design , first_group , second_group , contrast_type , contrast_index , basename , group_name , contrast , mapped , group_of_subjects , covariate_table , filename_variable , template , processing , Template , best , method , studyname , gyrus , smoothing , sid , smallerlength , greaterlength , space , segmentation_method
subject , filename_variable
subject , acquisition , filename_variable
time_duration , acquisition_date , time_point , rescan , subject , session , acquisition , analysis , graph_version , sulci_recognition_session , manually_labelled , automatically_labelled , group_of_subjects , filename_variable , processing , side
filename_variable
atlasname , filename_variable , sulci_database , sulci_segments_model_type , side